Alzheimer’s disease (AD) is a progressive neurodegenerative disease of the brain and the most common form of dementia in older adults. The progression of AD often follows a predictable temporal and spatial pattern where specific brain regions are affected at different stages of the disease. However, it is unclear why the disease affects certain regions of the brain or which specific cell types within these brain regions are selectively vulnerable. To discover cell types and circuits that are altered in normal aging and AD progression, the AD-MAPs program supports efforts to generate comprehensive multimodal atlases and brain-wide connectomes across species. In addition, the AD-MAPs program supports projects performing secondary analyses of these datasets. Ultimately, the goal of the program is to enable a deeper understanding of selective cell and circuit vulnerability in aging and AD.
AD-MAPs Funding Opportunities
Explore current NIA funding opportunities related to AD-MAPs.
Concept: Data Coordinating Center for the Aging and Alzheimer’s Disease Mouse Brain Atlas (AD-MBA)
- As part of the AD-MAPs program, NIA supports multiple projects using mouse models to generate comprehensive atlases of brain cell types and circuits that are altered during aging and dementia. Currently, there is no dedicated support for a centralized data sharing, integration, and dissemination infrastructure, and thus these valuable datasets remain siloed. This concept seeks to address this critical need by unifying these multiscale datasets and creating a central, unified research resource: The Aging and AD Mouse Brain Atlas (AD-MBA). Creation of the AD-MBA will include establishment of a data coordinating center to facilitate collaborations across groups, perform intensive analysis of multiscale datasets, and manage their dissemination. A successful coordinating center will:
- Integrate and harmonize existing multi-modal datasets from a subset of NIA-supported studies.
- Develop and incorporate tools for multi-scale modeling of multi-omics and connectomics datasets.
- Create an accessible web-based platform to disseminate integrated data.
- Capitalize on existing resources and infrastructure, including the AD Knowledge Portal, and enable future alignment with other NIH programs, such as MODEL-AD and the BRAIN Initiative .
- This Notice of Funding Opportunity (NOFO) invites applications proposing innovative strategies to target and manipulate brain cell subtypes that are altered in aging, Alzheimer's disease and Alzheimer’s disease-elated dementias (AD/ADRDs). Specifically, the goal of this NOFO is to encourage the development and utilization of sophisticated tools that pair breakthroughs in adeno-associated virus (AAV) capsid engineering with enhancer element identification to do the following:
- Optimize precise targeting of disease-relevant cell subtypes in aged and degenerating mammalian brains.
- Monitor and/or manipulate these cells in vivo to address mechanistic hypotheses related to brain aging and AD/ADRD in animal models.
NOT-AG-21-040: Selective Cell and Network Vulnerability in Aging and Alzheimer's Disease (R01/R21)
- The goal of this Notice of Special Interest (NOSI) is to stimulate research to define and characterize neural cell populations (e.g., neurons and glia), neural activity and circuits, structural and functional networks, and brain regions that are vulnerable (or resistant) in brain aging and AD and the mechanisms underlying such selective vulnerability.
Projects in the AD-MAP Program
Highlighted below are a selection of ongoing grants within the AD-MAPs program.
Cellular Atlases
Advances in single cell molecular profiling technologies have enabled the discovery and characterization of brain cell types that are selectively vulnerable during normal aging and neurodegenerative disease. Using transcriptomics and epigenomics approaches, NIA supported investigators are developing high resolution brain-wide maps of cell types during aging and AD progression in mouse models and humans. By identifying impacted cell types in specific brain regions at different stages of AD, these cellular atlases will ultimately serve as a platform to further research toward understanding selectively vulnerable cell types in AD. Select NIA grants are shown below.
Human
A platform for cell type-level transcriptomic, epigenomic and spatial interrogation of Alzheimer's disease (U19 AG060909) grant at the Seattle Alzheimer’s Disease Brain Atlas (SEA-AD)
- Investigators: Ed Lein, C. Dirk Keene, Michael Hawrylycz, Jennie Close, Rebecca Hodge, Jeremy Miller
Mouse
Molecular and anatomical characterization of cell types in the aging mouse brain
- Investigators: Hongkui Zheng, Bosiljka Tasic
Epigenome-based Cell Census and Regulatory Element Discovery in the Aging Mouse Brain
- Investigators: Joseph Ecker, Bing Ren
Spatial genomics single cell analysis of aging brains
- Investigators: Long Cai, Guo-Cheng Yuan
Epigenomic analysis of neural circuits in Alzheimer's disease mouse models
- Investigators: Xiangmin Xu, Bing Ren
- Investigators: Xiangmin Xu, Michael Koob, Bing Ren
- Investigator: Kuo-Fen Lee
Multidimensional mapping of vulnerable cell types in humanized Alzheimer's disease mouse models
- Investigators: Inman Cobos, Jorge Palop
A Translational 3D Map of Hippocampal Cell Types To Drive Investigations of Alzheimer's Disease
- Investigator: Michael Bienkowski
Circuit Connectomes
Brain network function is disrupted in many neurodegenerative disorders, including AD, and this dysregulated circuitry can lead to a progressive loss of cognitive function. Despite the impact of circuit level dysfunction in AD, there lacks a detailed characterization and mechanistic understanding of the neural circuitry contributing to disease progression. To enable a deeper understanding of brain circuits and connectivity in normal aging and AD, NIA supported investigators are generating brain-wide connectomes in mouse models and humans. Select NIA grants are shown below.
Human
Vulnerability and Resiliency in the Aging Adult Brain Connectome (AABC) (U19AG073585) grant at the Aging Adult Brain Connectome (AABC)
- Investigators: Beau Ances, David Salat, Robert Welsh, Essa Yacoub
Mouse
Mapping the vulnerable locus coeruleus pathways in aging and AD
- Investigators: Kwanghun Chung, Li-Huei Tsai
Mapping Cellular Resolution Connectopathies in Aging and Alzheimer's Disease
- Investigators: Hong-Wei Dong, Bruce Lamb, X. William Yang
Circuit-specific cell types in aging and Alzheimer's disease
- Investigators: Kuo-Fen Lee, Margarita Behrens
Cell-type-specific neural circuit connectomes in the mouse models of aging and Alzheimer's disease
- Investigators: Xiangmin Xu, Kim Green, Eran Mukamel, Wei Xu
- Investigators: Kuo-Fen Lee, Anthony Zador
Sexual dimorphic cell type and connectivity atlases of the aging and AD mouse brains
- Investigator: Hong-Wei Dong
Secondary Analysis
To further characterize selectively vulnerable cells and circuits in brain aging and AD, advanced computational approaches are being leveraged to maximize the wealth of data emerging from the AD-MAPs program. Select NIA grants are shown below.
- Investigator: Jean Augustinack
Deep Learning Algorithms for FreeSurfer
- Investigator: Bruce Fischl
- Investigator: Christos Davatzikos
- Investigator: Guorong Wu
Connectomic Biomarkers of Preclinical Alzheimer's Disease within Multi-Synaptic Pathways
- Investigator: Iman Aganj
Contact Information
To learn more about NIA-funded research on Alzheimer’s Disease Multimodal Atlas Projects (AD-MAPs) contact Erin E. Gray, Ph.D. at erin.gray@nih.gov .
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